Nextflow Modules
Showing module(s) with keyword "long read"
| Module | Keywords | Description |
|---|---|---|
| nf-core/longstitch | scaffolding long read assembly correction | "A genome assembly correction and scaffolding pipeline using long reads, consisting of up to three steps: - Tigmint cuts the draft assembly at potentially misassembled regions - ntLink is then used to scaffold the corrected assembly - followed by ARKS for further scaffolding (optional)" |
| nf-core/parabricks/minimap2 | align sort bqsr duplicates long read | NVIDIA Clara Parabricks GPU-accelerated minimap2 for aligning long read sequences against a large reference database using an accelerated KSW2 to convert FASTQ to BAM/CRAM. |
| nf-core/strdust | long read tandem repeats genomics | Tandem repeat genotyper for long reads |