Nextflow Modules
Showing module(s) with keyword "scaffolding"
| Module | Keywords | Description |
|---|---|---|
| nf-core/longstitch | scaffolding long read assembly correction | "A genome assembly correction and scaffolding pipeline using long reads, consisting of up to three steps: - Tigmint cuts the draft assembly at potentially misassembled regions - ntLink is then used to scaffold the corrected assembly - followed by ARKS for further scaffolding (optional)" |
| nf-core/ragtag/scaffold | scaffolding ragtag assembly genome | Scaffolding is the process of ordering and orienting draft assembly (query) sequences into longer sequences. Gaps (stretches of "N" characters) are placed between adjacent query sequences to indicate the presence of unknown sequence. RagTag uses whole-genome alignments to a reference assembly to scaffold query sequences. RagTag does not alter input query sequence in any way and only orders and orients sequences, joining them with gaps. |
| nf-core/salsa2 | assembly hi-c scaffolding long reads salsa salsa2 | SALSA, A tool to scaffold long read assemblies with HiC |
| nf-core/yahs | scaffolding assembly yahs hic | Performs assembly scaffolding using YaHS |