Nextflow Modules
Showing module(s) with keyword "low frequency variant calling"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/lofreq/alnqual | Process | variant calling low frequency variant calling variants bam | Lofreq subcommand to for insert base and indel alignment qualities |
| nf-core/lofreq/call | Process | variant calling low frequency variant calling lofreq lofreq/call | Lofreq subcommand to call low frequency variants from alignments |
| nf-core/lofreq/callparallel | Process | variant calling low frequency variant calling call variants | It predicts variants using multiple processors |
| nf-core/lofreq/filter | Process | variant calling low frequency variant calling filtering lofreq lofreq/filter | Lofreq subcommand to remove variants with low coverage or strand bias potential |
| nf-core/lofreq/somatic | Process | variant calling low frequency variant calling somatic variants vcf | Lofreq subcommand to call low frequency variants from alignments when tumor-normal paired samples are available |
| nf-core/lofreq/viterbi | Process | variant calling low frequency variant calling variants bam probabilistic realignment | Lofreq subcommand to call low frequency variants from alignments when tumor-normal paired samples are available |