Nextflow Modules
Showing module(s) with keyword "mapcounter"
| Module | Keywords | Description |
|---|---|---|
| nf-core/hmmcopy/generatemap | hmmcopy mapcounter mappability | Perl script (generateMap.pl) generates the mappability of a genome given a certain size of reads, for input to hmmcopy mapcounter. Takes a very long time on large genomes, is not parallelised at all. |
| nf-core/hmmcopy/mapcounter | hmmcopy mapcounter cnv | mapCounter function from HMMcopy utilities, used to generate mappability in non-overlapping windows from a bigwig file |