Nextflow Modules
Showing module(s) with keyword "ngscheckmate"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/bam_ngscheckmate | Workflow | ngscheckmate qc bam snp | Take a set of bam files and run NGSCheckMate to determine whether samples match with each other, using a set of SNPs. |
| nf-core/fastq_ngscheckmate | Workflow | ngscheckmate qc fastq snp | Take a set of fastq files and run NGSCheckMate to determine whether samples match with each other, using a set of SNPs. |
| nf-core/ngscheckmate/fastq | Process | ngscheckmate matching snp qc | Determining whether sequencing data comes from the same individual by using SNP matching. This module generates vaf files for individual fastq file(s), ready for the vafncm module. |
| nf-core/ngscheckmate/ncm | Process | ngscheckmate matching snp | Determining whether sequencing data comes from the same individual by using SNP matching. Designed for humans on vcf or bam files. |
| nf-core/ngscheckmate/patterngenerator | Process | ngscheckmate matching snp qc | Determining whether sequencing data comes from the same individual by using SNP matching. This module generates PT files from a bed file containing individual positions. |
| nf-core/ngscheckmate/vafncm | Process | ngscheckmate matching snp qc | Determining whether sequencing data comes from the same individual by using SNP matching. This module generates PT files from a bed file containing individual positions. |