Nextflow Modules
Showing module(s) with keyword "shigella"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/shigapass | Process | bacteria shigella stec | ShigaPass is an in silico tool used to predict Shigella serotypes and to differentiate between Shigella, EIEC (Enteroinvasive E. coli), and non Shigella/EIEC using assembled whole genomes. |
| nf-core/shigatyper | Process | fastq shigella serotype | Determine Shigella serotype from Illumina or Oxford Nanopore reads |
| nf-core/shigeifinder | Process | fastq fasta shigella serotype | Determine Shigella serotype from assemblies or Illumina paired-end reads |