Nextflow Modules
Showing module(s) with keyword "snpeff"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/cache_download_ensemblvep_snpeff | Workflow | ensemblvep snpeff download annotation cache | downlad annotation cache for snpeff and ensemblvep |
| nf-core/snpeff/download | Process | annotation effect prediction snpeff variant vcf | Genetic variant annotation and functional effect prediction toolbox |
| nf-core/snpeff/snpeff | Process | annotation effect prediction snpeff variant vcf | Genetic variant annotation and functional effect prediction toolbox |
| nf-core/utils_annotation_cache | Workflow | snpeff ensemblvep annotation-cache annotation cache verification | Check the path to the annotation cache depending if local or on the cloud, or using annotation-cache itself |
| nf-core/vcf_annotate_ensemblvep_snpeff | Workflow | vcf annotation ensemblvep snpeff | Perform annotation with ensemblvep and/or snpeff and bgzip + tabix index the resulting VCF file. This subworkflow uses the scatter-gather method to run VEP/snpEff in parallel to increase throughput. The input VCF is split into multiple smaller VCFs of fixed size, which are annotated separately and concatenated back together to a single output file per sample. Only VCF/BCF outputs are currently supported. |
| nf-core/vcf_annotate_snpeff | Workflow | vcf annotation snpeff | Perform annotation with snpEff and bgzip + tabix index the resulting VCF file |