Nextflow Modules
Showing module(s) with keyword "svannotate"
| Module | Keywords | Description |
|---|---|---|
| nf-core/gatk4/svannotate | annotate gatk4 structural variants svannotate vcf | Adds predicted functional consequence, gene overlap, and noncoding element overlap annotations to SV VCF from GATK-SV pipeline. Input files are an SV VCF, a GTF file containing primary or canonical transcripts, and a BED file containing noncoding elements. Output file is an annotated SV VCF. |