Nextflow Modules
Showing module(s) with keyword "SV"
| Module | Keywords | Description |
|---|---|---|
| nf-core/eklipse | eklipse mitochondria mtDNA circos deletion SV | tool for detection and quantification of large mtDNA rearrangements. |
| nf-core/pypgx/preparedepthofcoverage | Pharmacogenetics pypgx SV | Prepare a depth of coverage file for all target genes with SV from BAM files. |
| nf-core/smoove/call | structural variants SV vcf wgs | smoove simplifies and speeds calling and genotyping SVs for short reads. It also improves specificity by removing many spurious alignment signals that are indicative of low-level noise and often contribute to spurious calls. Developed by Brent Pedersen. |
| nf-core/svtk/standardize | svtk structural variants SV vcf standardization | Convert SV calls to a standardized format. |