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Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

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3 pipeline(s) matching "differential-expression".

Pipeline Keywords Description
nf-core/differentialabundance
2.0.0
atac-seq chip-seq deseq2 differential-abundance +6 Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
nf-core/lncpipe
0.0.0-ac1ab61
differential-expression lncrna long-non-coding non-coding +3 UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets
nf-core/slamseq
1.0.0
differential-expression quantseq slamseq transcriptomics SLAMSeq processing and analysis pipeline