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Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

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2 pipeline(s) matching "epidemiology".

Pipeline Keywords Description
nf-core/pathogenepidemiology
0.0.0-8261242
n/a [DEVELOPMENT UNDERWAY] A profile-based pipeline for genomic epidemiological analysis of predefined pathogens.
nf-core/viralmetagenome
1.2.0
epidemiology fastq ngs viral-metagenomics +2 A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.