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Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

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2 pipeline(s) matching "viral-metagenomics".

Pipeline Keywords Description
nf-core/vipr
0.0.0-6eef3b3
genome-assembly metagenomics variant-calling viral +5 Assembly and intrahost / low-frequency variant calling for viral samples
nf-core/viralmetagenome
1.2.0
epidemiology fastq ngs viral-metagenomics +2 A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.