Nextflow Registry | Nextflow Pipelines

Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

4 pipeline(s) matching "quality-control".

Pipeline	Keywords	Description
nf-core/genomeqc 1.0.1	genome-assembly-evaluation genomics phylogenetic-trees quality-control	Compare the quality of multiple genomes, along with their annotations.
nf-core/scdownstream 0.0.0-3c2644c	clustering dimensionality-reduction integration quality-control +2	A single cell transcriptomics pipeline for QC, integration and making the data presentable
nf-core/seqinspector 1.1.2	genomics quality-control	Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and group specific Multiqc reports. The pipeline is targeting core facilities or research groups with larger sequencing throughput.
nf-core/tumourevo 1.0.0	cancer-evolution cancer-genomics copy-number-variation mutational-signatures +4	Analysis pipeline to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution)