Nextflow Registry | Nextflow Pipelines

Nextflow Pipelines

Nextflow pipelines hosted in Git repositories. Each published release records the Git revision it runs and the launch configuration it ships with.

3 pipeline(s) matching "integration".

Pipeline	Keywords	Description
nf-core/epigenomesegmentation 0.0.0-09de6dc	epigenome multi-omics-integration segmentation	An nf-core pipeline for epigenome segmentation using EpiSegMix/Meth — a hidden Markov model with flexible read count distributions and state duration modeling for histone, open chromatin, and methylation signals.
nf-core/scdownstream 0.0.0-3c2644c	clustering dimensionality-reduction integration quality-control +2	A single cell transcriptomics pipeline for QC, integration and making the data presentable
nf-core/viralintegration 0.1.1	chimeric-alignment ctat viral-integration virus +1	Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.