nf-core/ale @ 0.0.0-0c7146d
Summary
ALE: assembly likelihood estimator.
Get started
Add the following snippet to your workflow script to include this module.
include { ALE } from 'nf-core/ale'
License
MIT License
Process
Name
|
ALE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
asm
file
|
Assembly in FASTA format *.{fasta,fa}
|
bam
file
|
BAM file containing sorted read mappings *.{bam}
|
Output
2 channels
#1
ale
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*_ALEoutput.txt
file
|
Output TXT file containing ALE results *_ALEoutput.{txt}
|
#2
versions_ale
tuple
${task.process}
string
|
The name of the process |
|---|---|
ALE
string
|
The name of the tool |
20180904
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| ale | ALE is a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies. | n/a |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 18:41:58 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fale/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/ale/blobs/sha256:61e98bab8a98ac6caad0bebbbcb76125257f5fe01f86968e310f77abe5c9bf13 |
| Size | 2.5 KB |
| Checksum | sha256:61e98bab8a98ac6caad0bebbbcb76125257f5fe01f86968e310f77abe5c9bf13 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:01:56 (UTC) | 3 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:01:27 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:41:58 (UTC) | 3 | 2.5 KB |