nf-core/amulety/translate @ 0.0.0-0c7146d
Summary
A module to translate BCR and TCR nucleotide sequences into amino acid sequences using amulety and igblast.
Get started
Add the following snippet to your workflow script to include this module.
include { AMULETY_TRANSLATE } from 'nf-core/amulety/translate'
License
MIT License
Process
Name
|
AMULETY_TRANSLATE |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
tsv
file
|
TSV with BCR/TCR nucleotide sequences in AIRR rearrangement format *.{tsv}
|
reference_igblast
file
|
Built reference databases for igblast |
|---|
Output
3 channels
#1
versions_amulety
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
amulety
string
|
The tool name |
amulety --help 2>&1 | grep -o 'version [0-9\.]\+' | grep -o '[0-9\.]\+'
string
|
The command used to generate the version of the tool |
#2
versions_igblastn
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
igblastn
string
|
The tool name |
igblastn -version | grep -o 'igblast[0-9\. ]\+' | grep -o '[0-9\. ]\+'
string
|
The command used to generate the version of the tool |
#3
repertoire_translated
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*_translated.tsv
file
|
TSV with BCR/TCR amino acid sequences in AIRR rearrangement format *.tsv
|
| Tool | Description | Homepage |
|---|---|---|
| amulety | Python package to create embeddings of BCR and TCR amino acid sequences. | https://amulety.readthedocs.io/en/latest/ |
| igblast | A tool for immunoglobulin (IG, BCR) and T cell receptor (TCR) V domain sequences blasting. | https://www.ncbi.nlm.nih.gov/igblast/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 18:42:30 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Famulety%2Ftranslate/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/amulety/translate/blobs/sha256:401c3d7a606b763a33694c2b3471575c42af0091de4fcd38385c51f8a8399f25 |
| Size | 2.9 KB |
| Checksum | sha256:401c3d7a606b763a33694c2b3471575c42af0091de4fcd38385c51f8a8399f25 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:02:17 (UTC) | 3 | 2.9 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:42:30 (UTC) | 4 | 2.9 KB |