Nextflow Modules
Showing module(s) with keyword "immunology"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/amulety/antiberta2 | Process | embeddings BCR antibody GPU-accelerated immunoinformatics immunology | A module to create antiberta2 embeddings of antibody (BCR) amino acid sequences using amulety. |
| nf-core/amulety/antiberty | Process | embeddings BCR antibody GPU-accelerated immunoinformatics immunology | A module to create antiberty embeddings of antibody (BCR) amino acid sequences using amulety. |
| nf-core/amulety/balmpaired | Process | embeddings BCR antibody GPU-accelerated immunoinformatics immunology | A module to create BALM paired embeddings of antibody (BCR) amino acid sequences using amulety. |
| nf-core/amulety/embed | Process | embeddings BCR antibody GPU-accelerated immunoinformatics immunology | A module to create embeddings of B-cell receptor (BCR) or T-cell receptor (TCR) amino acid sequences using amulety. |
| nf-core/amulety/esm2 | Process | embeddings BCR antibody GPU-accelerated immunoinformatics immunology | A module to create esm2 embeddings of antibody (BCR) amino acid sequences using amulety. |
| nf-core/amulety/translate | Process | immunology BCR TCR translation amino acid nucleotide immunoinformatics | A module to translate BCR and TCR nucleotide sequences into amino acid sequences using amulety and igblast. |
| nf-core/anarcii | Process | annotate antibody TCR immunology | A language model for antigen receptor numbering |
| nf-core/stitchr/stitchrdl | Process | TCR IMGT immunology reference | Download and format IMGT/GENE-DB reference data for use with stitchr |
| nf-core/stitchr/thimble | Process | TCR sequence immunology | Automatic TCR nucleotide sequence generation from V, J and CDR3 information |