Nextflow Registry | nf-core/anndata/getsize@0.0.0-0c7146d

nf-core/anndata/getsize @ 0.0.0-0c7146d

Get the size (n_cells or n_genes) of an anndata object stored as a h5ad file

anndata single-cell scanpy

Latest version: 0.0.0-6c4ed3a

Total downloads: 6

Source: nf-core/modules

Authors: @LeonHafner

Maintainers: @LeonHafner

Get the size (n_cells or n_genes) of an anndata object stored as a h5ad file

Add the following snippet to your workflow script to include this module.

include { ANNDATA_GETSIZE } from 'nf-core/anndata/getsize'

MIT License

Process

`Name`	`ANNDATA_GETSIZE`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`h5ad` file	H5AD file of anndata object `*.h5ad`

`size_type` string	either 'cells', 'genes', 'obs', or 'var'

Output 2 channels

#1 size tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.txt` file	text file containing the requested size `*.txt`

#2 versions_anndata

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
anndata	An annotated data matrix.	http://anndata.rtfd.io

Version	0.0.0-0c7146d
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	08 Apr 2026 18:42:42 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fanndata%2Fgetsize/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/anndata/getsize/blobs/sha256:85b807e738570f4ed00cefe94f69d554e5e4421f13e73f748b07d88fdea14e48
Size	3.2 KB
Checksum	sha256:85b807e738570f4ed00cefe94f69d554e5e4421f13e73f748b07d88fdea14e48
Downloads	2

Version	Date	Status	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:02:25 (UTC)		4	3.2 KB
0.0.0-0c7146d	08 Apr 2026 18:42:42 (UTC)		2	3.2 KB