Nextflow Modules
Showing module(s) with keyword "scanpy"
| Module | Keywords | Description |
|---|---|---|
| nf-core/anndata/getsize | anndata single-cell scanpy | Get the size (n_cells or n_genes) of an anndata object stored as a h5ad file |
| nf-core/scanpy/filter | filter quality-control scanpy single-cell preprocessing | Filter cells and genes in single-cell RNA-seq data using Scanpy |
| nf-core/scanpy/hashsolo | anndata single-cell hashing demultiplexing scanpy | Probabilistic demultiplexing of cell hashing data |
| nf-core/scanpy/pca | pca principal-component-analysis scanpy single-cell dimensionality-reduction | Perform principal component analysis (PCA) on single-cell RNA-seq data using Scanpy |
| nf-core/scanpy/scrublet | scrublet doublet-detection scanpy single-cell | Detect doublets in single-cell RNA-seq data using Scrublet via Scanpy |