nf-core/argnorm @ 0.0.0-3fc6d40
Summary
Normalize antibiotic resistance genes (ARGs) using the ARO ontology (developed by CARD).
Get started
Add the following snippet to your workflow script to include this module.
include { ARGNORM } from 'nf-core/argnorm'
License
MIT License
Process
Name
|
ARGNORM |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
input_tsv
file
|
ARG annotation output *.tsv
|
tool
string
|
ARG annotation tool used argsoap|abricate|deeparg|resfinder|amrfinderplus
|
|---|
db
string
|
Database used for ARG annotation sarg|ncbi|resfinder|deeparg|megares|argannot|resfinderfg
|
|---|
Output
2 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.tsv
file
|
Normalized argNorm output *.tsv
|
#2
versions_argnorm
tuple
${task.process}
string
|
The name of the process |
|---|---|
argnorm
string
|
The name of the tool |
argnorm --version
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| argnorm | Normalize antibiotic resistance genes (ARGs) using the ARO ontology (developed by CARD). | https://argnorm.readthedocs.io/en/latest/ |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:01:57 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fargnorm/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/argnorm/blobs/sha256:c2b62b7258482bf852d3aea3760aac884c2ccf181884b62627b20d4ead99aa67 |
| Size | 2.6 KB |
| Checksum | sha256:c2b62b7258482bf852d3aea3760aac884c2ccf181884b62627b20d4ead99aa67 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:02:37 (UTC) | 3 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:01:57 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:43:05 (UTC) | 4 | 2.6 KB |