nf-core/ariba/getref @ 0.0.0-3fc6d40
Summary
Download and prepare database for Ariba analysis
Get started
Add the following snippet to your workflow script to include this module.
include { ARIBA_GETREF } from 'nf-core/ariba/getref'
License
MIT License
Process
Name
|
ARIBA_GETREF |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
db_name
string
|
A database to setup up for Ariba |
Output
2 channels
#1
db
tuple
meta
file
|
An Ariba prepared database *.tar.gz
|
|---|---|
${db_name}.tar.gz
file
|
An Ariba prepared database *.tar.gz
|
#2
versions_ariba
tuple
${task.process}
string
|
The name of the process |
|---|---|
ariba
string
|
The name of the tool |
ariba version | sed -nE "s/ARIBA version: //p"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| ariba | ARIBA: Antibiotic Resistance Identification By Assembly | https://sanger-pathogens.github.io/ariba/ |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:01:58 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fariba%2Fgetref/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/ariba/getref/blobs/sha256:951473cd5b190dbfcfb1bdb009dd934eafd741696df9b56266710e5f02095253 |
| Size | 2.1 KB |
| Checksum | sha256:951473cd5b190dbfcfb1bdb009dd934eafd741696df9b56266710e5f02095253 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:02:40 (UTC) | 4 | 2.0 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:01:58 (UTC) | 3 | 2.1 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:43:09 (UTC) | 3 | 2.0 KB |