nf-core/ariba/run @ 0.0.0-3fc6d40
Summary
Query input FASTQs against Ariba formatted databases
Get started
Add the following snippet to your workflow script to include this module.
include { ARIBA_RUN } from 'nf-core/ariba/run'
License
MIT License
Process
Name
|
ARIBA_RUN |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reads
file
|
Paired-end reads in FASTQ format *_R[1|2].{fastq.gz,fq.gz}
|
#2
tuple
meta2
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
db
file
|
An Ariba prepared database *.tar.gz
|
Output
2 channels
#1
results
tuple
meta
file
|
A directory of Ariba analysis outputs *
|
|---|---|
${prefix}/*
file
|
A directory of Ariba analysis outputs *
|
#2
versions_ariba
tuple
${task.process}
string
|
The name of the process |
|---|---|
ariba
string
|
The name of the tool |
ariba version 2>&1 | sed '1!d;s/ARIBA version: //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| ariba | ARIBA: Antibiotic Resistance Identification By Assembly | https://sanger-pathogens.github.io/ariba/ |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:01:59 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fariba%2Frun/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/ariba/run/blobs/sha256:6e31abbbc855baf8e869c2884e30c048acd11830b4c3f53180e0081e00709a0a |
| Size | 2.8 KB |
| Checksum | sha256:6e31abbbc855baf8e869c2884e30c048acd11830b4c3f53180e0081e00709a0a |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:02:41 (UTC) | 3 | 2.8 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:01:59 (UTC) | 3 | 2.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:43:11 (UTC) | 2 | 2.8 KB |