nf-core/bamaligncleaner @ 0.0.0-3fc6d40
Summary
removes unused references from header of sorted BAM/CRAM files.
Get started
Add the following snippet to your workflow script to include this module.
include { BAMALIGNCLEANER } from 'nf-core/bamaligncleaner'
License
MIT License
Process
Name
|
BAMALIGNCLEANER |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
BAM/CRAM file *.{bam,cram}
|
Output
2 channels
#1
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bam
file
|
Sorted BAM/CRAM file *.{bam,cram}
|
#2
versions_bamaligncleaner
tuple
${task.process}
string
|
The name of the process |
|---|---|
bamaligncleaner
string
|
The name of the tool |
bamAlignCleaner --version | sed 's/.*version //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bamaligncleaner | Removes unaligned references in aligned BAM alignment file | https://github.com/maxibor/bamAlignCleaner |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:02:35 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fbamaligncleaner/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/bamaligncleaner/blobs/sha256:753a371e0cbc44c18d1bf580f8fb716ac780ff2d8ceb5dab163488c1d9b5c805 |
| Size | 2.3 KB |
| Checksum | sha256:753a371e0cbc44c18d1bf580f8fb716ac780ff2d8ceb5dab163488c1d9b5c805 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:03:17 (UTC) | 3 | 2.2 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:02:35 (UTC) | 4 | 2.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:44:08 (UTC) | 3 | 2.2 KB |