Nextflow Modules
Showing module(s) with keyword "clean"
| Module | Keywords | Description |
|---|---|---|
| nf-core/bamaligncleaner | bam clean align | removes unused references from header of sorted BAM/CRAM files. |
| nf-core/evigene/tr2aacds | genomics transcript assembly clean polish filter redundant duplicate | Uses evigene/scripts/prot/tr2aacds.pl to filter a transcript assembly |
| nf-core/hostile/clean | hostile decontamination human removal host removal clean | Removes host reads from short- and long-read FASTQ sequencing files |
| nf-core/picard/cleansam | clean bam picard sam clipping | Cleans the provided BAM, soft-clipping beyond-end-of-reference alignments and setting MAPQ to 0 for unmapped reads |