nf-core/barrnap @ 0.0.0-3fc6d40
Summary
barrnap uses a hmmer profile to find rrnas in reads or contig fasta files
Get started
Add the following snippet to your workflow script to include this module.
include { BARRNAP } from 'nf-core/barrnap'
License
MIT License
Process
Name
|
BARRNAP |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fasta
file
|
fasta file *.fasta
|
dbname
string
|
database to use(bacteria, archaea, eukaryota, metazoan mitochondria) |
Output
2 channels
#1
gff
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.gff
file
|
gff file containing coordinates of genes *.gff
|
#2
versions_barrnap
tuple
${task.process}
string
|
The name of the process |
|---|---|
barrnap
string
|
The name of the tool |
barrnap --version 2>&1 | sed "s/barrnap //g"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| barrnap | Barrnap predicts the location of ribosomal RNA genes in genomes (bacteria, archaea, metazoan mitochondria and eukaryotes). | https://github.com/tseemann/barrnap |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:03:22 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fbarrnap/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/barrnap/blobs/sha256:f17b1b215c6d9b9af561e1a1a9536028390dd8ee1cbca3e5731666ca6397c6aa |
| Size | 2.4 KB |
| Checksum | sha256:f17b1b215c6d9b9af561e1a1a9536028390dd8ee1cbca3e5731666ca6397c6aa |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:04:31 (UTC) | 5 | 2.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:03:22 (UTC) | 4 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:45:14 (UTC) | 3 | 2.3 KB |