Nextflow Modules
Showing module(s) with keyword "rrna"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/barrnap | Process | rrna sequences removal | barrnap uses a hmmer profile to find rrnas in reads or contig fasta files |
| nf-core/fastq_qc_trim_filter_setstrandedness | Workflow | fastq rnaseq rrna trimming subsample strandedness | Performs linting, quality control, trimming, filtering, and strandedness determination on RNA-seq FASTQ files, preparing them for downstream analysis. |
| nf-core/fastq_remove_rrna | Workflow | fastq rrna ribosomal filter sortmerna ribodetector bowtie2 | Remove ribosomal RNA reads from FASTQ files using SortMeRNA, RiboDetector, or Bowtie2 |
| nf-core/infernal/cmscan | Process | rrna covariance model sequence search cmscan | Search covariance models against a sequence collection using cmscan |
| nf-core/infernal/cmsearch | Process | rrna covariance model sequence search | Search covariance models against a sequence database |