nf-core/bbmap/sendsketch @ 0.0.0-6c4ed3a
Summary
Compares query sketches to reference sketches hosted on a remote server via the Internet.
Get started
Add the following snippet to your workflow script to include this module.
include { BBMAP_SENDSKETCH } from 'nf-core/bbmap/sendsketch'
License
MIT License
Process
Name
|
BBMAP_SENDSKETCH |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
file
file
|
file with nucleotide sequences *.{fna, fa, fasta, fa.gz, fasta.gz, fna.gz, fastq.gz, fastq, fq.gz, fq}
|
Output
2 channels
#1
hits
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt
file
|
.txt file containing hits from a query seuqnce to various reference sequences output *.{txt}
|
#2
versions_bbmap
tuple
${task.process}
string
|
The name of the process |
|---|---|
bbmap
string
|
The name of the tool |
bbversion.sh | grep -v "Duplicate cpuset"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bbmap | BBMap is a short read aligner, as well as various other bioinformatic tools. | https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:04:45 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fbbmap%2Fsendsketch/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/bbmap/sendsketch/blobs/sha256:3c06741cb0f8c38d15b49e9efb431a62864342f17d853d97e9f206a2cf3d7859 |
| Size | 2.6 KB |
| Checksum | sha256:3c06741cb0f8c38d15b49e9efb431a62864342f17d853d97e9f206a2cf3d7859 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:04:45 (UTC) | 4 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:45:38 (UTC) | 2 | 2.6 KB |