Nextflow Modules
Showing module(s) with keyword "query"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/bbmap/sendsketch | Process | taxonomy classification sketch query fastq fasta | Compares query sketches to reference sketches hosted on a remote server via the Internet. |
| nf-core/bcftools/query | Process | query variant calling bcftools VCF | Extracts fields from VCF or BCF files and outputs them in user-defined format. |
| nf-core/entrezdirect/esummary | Process | public datasets ncbi entrez metadata query database | Queries an NCBI database using Unique Identifier(s) |
| nf-core/folddisco/query | Process | protein structure structural motif motif search geometric hashing query pdb | Search a prebuilt folddisco index for a discontinuous residue motif in a query protein structure |
| nf-core/mash/dist | Process | distance estimate reference query | Calculate Mash distances between reference and query sequences |
| nf-core/svdb/query | Process | structural variants query svdb | Query a structural variant database, using a vcf file as query |
| nf-core/sylph/query | Process | query metagenomics sylph containment genome | Sylph query command for querying genome databases against reads/metagenomes |