nf-core/bowtie2/build @ 0.0.0-02a6b4c
Summary
Builds bowtie index for reference genome
Get started
Add the following snippet to your workflow script to include this module.
include { BOWTIE2_BUILD } from 'nf-core/bowtie2/build'
License
MIT License
Process
Name
|
BOWTIE2_BUILD |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing reference information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
Reference genome FASTA file *.{fa,fasta,fna}
|
fai
file
|
Reference genome FASTA index file *.{fai}
|
Output
2 channels
#1
index
tuple
meta
map
|
Groovy Map containing reference information e.g. [ id:'test', single_end:false ] |
|---|---|
bowtie2
directory
|
Bowtie2 genome index files *.bt2
|
#2
versions_bowtie2
tuple
${task.process}
string
|
The name of the process |
|---|---|
bowtie2
string
|
The name of the tool |
bowtie2 --version 2>&1 | sed -n 's/.*bowtie2-align-s version //p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bowtie2 | Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. | http://bowtie-bio.sourceforge.net/bowtie2/index.shtml |
| Version | 0.0.0-02a6b4c |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 13 Apr 2026 15:00:14 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fbowtie2%2Fbuild/0.0.0-02a6b4c/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/bowtie2/build/blobs/sha256:5bdee167fffeb28baa79883780edd9f916e25b2f3002f210319a110cf03bd7be |
| Size | 2.5 KB |
| Checksum | sha256:5bdee167fffeb28baa79883780edd9f916e25b2f3002f210319a110cf03bd7be |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:07:51 (UTC) | 3 | 2.5 KB | |
| 0.0.0-7f68141 | 16 Apr 2026 15:00:32 (UTC) | 4 | 2.5 KB | |
| 0.0.0-02a6b4c | 13 Apr 2026 15:00:14 (UTC) | 4 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:49:29 (UTC) | 3 | 2.4 KB |