nf-core/centrifuge/build @ 0.0.0-3fc6d40
Summary
Build centrifuge database for taxonomic profiling
Get started
Add the following snippet to your workflow script to include this module.
include { CENTRIFUGE_BUILD } from 'nf-core/centrifuge/build'
License
MIT License
Name
|
CENTRIFUGE_BUILD |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
Fasta file containing sequences to be used in centrifuge database. *.{fasta,fna}
|
conversion_table
file
|
A tab-separated file with sequence ID to taxonomy ID mapping *.{map}
|
|---|
taxonomy_tree
file
|
A \t|\t-separated file mapping taxonomy. Typically nodes.dmp from the NCBI taxonomy dump. Links taxonomy IDs to their parents *.{dmp}
|
|---|
name_table
file
|
A '|'-separated file mapping taxonomy IDs to a name. Typically names.dmp from the NCBI taxonomy dump. Links taxonomy IDs to their scientific name *.{dmp}
|
|---|
size_table
file
|
Optional list of taxonomic IDs and lengths of the sequences belonging to the same taxonomic IDs. *
|
|---|
cf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] ${prefix}/
|
|---|---|
${prefix}/
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] ${prefix}/
|
versions_centrifuge
tuple
${task.process}
string
|
The name of the process |
|---|---|
centrifuge
string
|
The name of the tool |
centrifuge --version 2>&1 | sed '1!d;s/.* version //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| centrifuge | Classifier for metagenomic sequences | https://ccb.jhu.edu/software/centrifuge/ |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:05:41 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcentrifuge%2Fbuild/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/centrifuge/build/blobs/sha256:1c9bd45ac8ee65518fc404f5b3a86aad0866e3ba4928bb44b56fab63b1d65937 |
| Size | 2.6 KB |
| Checksum | sha256:1c9bd45ac8ee65518fc404f5b3a86aad0866e3ba4928bb44b56fab63b1d65937 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:08:50 (UTC) | 3 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:05:41 (UTC) | 3 | 2.6 KB | |
| 0.0.0-e18a462 | 20 Apr 2026 15:00:08 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:51:15 (UTC) | 3 | 2.6 KB |