|
nf-core/centrifuge/build
|
Process
|
database
metagenomics
build
db
fasta
|
Build centrifuge database for taxonomic profiling
|
|
nf-core/centrifuge/centrifuge
|
Process
|
classify
metagenomics
fastq
db
|
Classifies metagenomic sequence data
|
|
nf-core/centrifuge/kreport
|
Process
|
classify
metagenomics
fastq
db
report
kraken
|
Creates Kraken-style reports from centrifuge out files
|
|
nf-core/fastq_extract_kraken_krakentools
|
Workflow
|
classify
metagenomics
fastq
db
kraken2
krakentools
extract
extractreads
|
Extract classified Kraken2 reads by taxonomic id
|
|
nf-core/kraken2/add
|
Process
|
metagenomics
db
classification
build
kraken2
add
|
Adds fasta files to a Kraken2 taxonomic database
|
|
nf-core/kraken2/build
|
Process
|
metagenomics
db
classification
build
kraken2
|
Builds Kraken2 database
|
|
nf-core/kraken2/buildstandard
|
Process
|
metagenomics
db
classification
build
kraken2
standard
download
|
Downloads and builds Kraken2 standard database
|
|
nf-core/kraken2/kraken2
|
Process
|
classify
metagenomics
fastq
db
|
Classifies metagenomic sequence data
|
|
nf-core/krakenuniq/preloadedkrakenuniq
|
Process
|
classify
metagenomics
kmers
fastq
db
|
Classifies metagenomic sequence data using unique k-mer counts
|