Nextflow Modules
Showing module(s) with keyword "db"
| Module | Keywords | Description |
|---|---|---|
| nf-core/centrifuge/build | database metagenomics build db fasta | Build centrifuge database for taxonomic profiling |
| nf-core/centrifuge/centrifuge | classify metagenomics fastq db | Classifies metagenomic sequence data |
| nf-core/centrifuge/kreport | classify metagenomics fastq db report kraken | Creates Kraken-style reports from centrifuge out files |
| nf-core/kraken2/add | metagenomics db classification build kraken2 add | Adds fasta files to a Kraken2 taxonomic database |
| nf-core/kraken2/build | metagenomics db classification build kraken2 | Builds Kraken2 database |
| nf-core/kraken2/buildstandard | metagenomics db classification build kraken2 standard download | Downloads and builds Kraken2 standard database |
| nf-core/kraken2/kraken2 | classify metagenomics fastq db | Classifies metagenomic sequence data |
| nf-core/krakenuniq/preloadedkrakenuniq | classify metagenomics kmers fastq db | Classifies metagenomic sequence data using unique k-mer counts |