nf-core/cnvpytor/partition @ 0.0.0-5d5b444
Summary
Calculate segmentation for specified bin size (multiple bin sizes separate by space)
Get started
Add the following snippet to your workflow script to include this module.
include { CNVPYTOR_PARTITION } from 'nf-core/cnvpytor/partition'
License
MIT License
Process
Name
|
CNVPYTOR_PARTITION |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
pytor
file
|
pytor file containing read depth data *.{pytor}
|
bin_sizes
string
|
list of binsizes separated by space e.g. "1000 10000" default is "1000" |
|---|
Output
2 channels
#1
pytor
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
${prefix}.pytor
file
|
pytor file *.pytor
|
#2
versions_cnvpytor
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
cnvpytor
string
|
The tool name |
cnvpytor --version 2>&1 | sed -n 's/.*CNVpytor //p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| cnvpytor | Calling CNVs using read depth | https://github.com/abyzovlab/CNVpytor |
| Version | 0.0.0-5d5b444 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 21 Apr 2026 15:00:50 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcnvpytor%2Fpartition/0.0.0-5d5b444/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/cnvpytor/partition/blobs/sha256:b84cd52255ffa2a2104225dc628d73443607193cc65506b3410e9da706f685d1 |
| Size | 2.3 KB |
| Checksum | sha256:b84cd52255ffa2a2104225dc628d73443607193cc65506b3410e9da706f685d1 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:10:53 (UTC) | 4 | 2.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:07:23 (UTC) | 3 | 2.3 KB | |
| 0.0.0-5d5b444 | 21 Apr 2026 15:00:50 (UTC) | 3 | 2.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:53:24 (UTC) | 3 | 2.3 KB |