Nextflow Registry | nf-core/ctatsplicing/prepgenomelib@0.0.0-0c7146d

nf-core/ctatsplicing/prepgenomelib @ 0.0.0-0c7146d

Reference preparation for CTAT-splicing

splicing cancer rna rnaseq

Latest version: 0.0.0-3fc6d40

Total downloads: 7

Source: nf-core/modules

Authors: @anoronh4 @nvnieuwk

Maintainers: @anoronh4

Reference preparation for CTAT-splicing

Add the following snippet to your workflow script to include this module.

include { CTATSPLICING_PREPGENOMELIB } from 'nf-core/ctatsplicing/prepgenomelib'

MIT License

Process

`Name`	`CTATSPLICING_PREPGENOMELIB`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`genome_lib` file	CTAT genome library reference `*`

`cancer_intron_tsv` file	CTAT-splicing data resource supplement

Output 2 channels

#1 reference tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`genome_lib` file	Modified CTAT genome library reference `*`

#2 versions_ctatsplicing tuple

`${task.process}` string	The name of the process
`ctatsplicing` string	The name of the tool
`0.0.3` string	The expression to obtain the version of the tool

Tool	Description	Homepage
ctatsplicing	Detection and annotation of cancer splicing aberrations	https://github.com/TrinityCTAT/CTAT-SPLICING

Version	0.0.0-0c7146d
Commit ID	3fc6d40d163d89ae44d40a00b9017d5a9df5170e
Release Date	08 Apr 2026 18:54:58 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fctatsplicing%2Fprepgenomelib/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/ctatsplicing/prepgenomelib/blobs/sha256:5ecdbb3124a1b8a50b68c3b22dc912ba11f0ddca5751effaff38386ea6493114
Size	5.1 KB
Checksum	sha256:5ecdbb3124a1b8a50b68c3b22dc912ba11f0ddca5751effaff38386ea6493114
Downloads	4

Version	Date	Status	Downloads	Size
0.0.0-3fc6d40	22 Apr 2026 15:08:20 (UTC)		3	5.1 KB
0.0.0-0c7146d	08 Apr 2026 18:54:58 (UTC)		4	5.1 KB