nf-core/custom/getchromsizes @ 0.0.0-3fc6d40
Summary
Generates a FASTA file of chromosome sizes and a fasta index file
Get started
Add the following snippet to your workflow script to include this module.
include { CUSTOM_GETCHROMSIZES } from 'nf-core/custom/getchromsizes'
License
MIT License
Process
Name
|
CUSTOM_GETCHROMSIZES |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
FASTA file *.{fa,fasta,fna,fas}
|
Output
4 channels
#1
fai
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fai
file
|
FASTA index file *.{fai}
|
#2
gzi
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.gzi
file
|
Optional gzip index file for compressed inputs *.gzi
|
#3
sizes
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.sizes
file
|
File containing chromosome lengths *.{sizes}
|
#4
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| samtools | Tools for dealing with SAM, BAM and CRAM files | http://www.htslib.org/ |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:08:28 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcustom%2Fgetchromsizes/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/custom/getchromsizes/blobs/sha256:4d5d30cd5137639c8df92af767e42093e11deb52b949f22805c0bb967cadaae1 |
| Size | 2.7 KB |
| Checksum | sha256:4d5d30cd5137639c8df92af767e42093e11deb52b949f22805c0bb967cadaae1 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:12:08 (UTC) | 2 | 2.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:08:28 (UTC) | 4 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:55:14 (UTC) | 1 | 2.7 KB |