Nextflow Registry | nf-core/custom/multiqccustombiotype@0.0.0-3fc6d40

nf-core/custom/multiqccustombiotype @ 0.0.0-3fc6d40

Generate MultiQC-compatible biotype count summaries from featureCounts output

biotype featurecounts multiqc rnaseq qc

Latest version: 0.0.0-6c4ed3a

Total downloads: 18

Source: nf-core/modules

Authors: @pinin4fjords

Maintainers: @pinin4fjords

Generate MultiQC-compatible biotype count summaries from featureCounts output

Add the following snippet to your workflow script to include this module.

include { CUSTOM_MULTIQCCUSTOMBIOTYPE } from 'nf-core/custom/multiqccustombiotype'

MIT License

Process

`Name`	`CUSTOM_MULTIQCCUSTOMBIOTYPE`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`count` file	featureCounts output count file `*.featureCounts.txt`

#2 tuple

`meta2` map	Groovy Map containing reference information
`header` file	Header file for the biotype counts MultiQC table `*.txt`

Output 3 channels

#1 tsv tuple

`meta` map	Groovy Map containing sample information
`*biotype_counts_mqc.tsv` file	Biotype counts formatted for MultiQC. The process fails if the number of biotype rows exceeds the threshold passed via `ext.args = '--max_biotypes N'` (default 100), since MultiQC cannot render a bar plot with that many categories. `*biotype_counts_mqc.tsv`

#2 rrna tuple

`meta` map	Groovy Map containing sample information
`*biotype_counts_rrna_mqc.tsv` file	rRNA percentage for MultiQC general stats `*biotype_counts_rrna_mqc.tsv`

#3 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
custom	Summarise featureCounts biotype assignments for MultiQC reporting	n/a

Version	0.0.0-3fc6d40
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	22 Apr 2026 15:08:32 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fcustom%2Fmultiqccustombiotype/0.0.0-3fc6d40/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/custom/multiqccustombiotype/blobs/sha256:3d987c92d2e111d336d42f192319e9e94811019ec31ef35a479bee4dfcef245b
Size	4.9 KB
Checksum	sha256:3d987c92d2e111d336d42f192319e9e94811019ec31ef35a479bee4dfcef245b
Downloads	3

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:12:13 (UTC)	3	4.9 KB
0.0.0-3fc6d40	22 Apr 2026 15:08:32 (UTC)	3	4.9 KB
0.0.0-f484e07	17 Apr 2026 15:00:06 (UTC)	3	4.9 KB
0.0.0-7f68141	16 Apr 2026 15:00:49 (UTC)	2	3.9 KB
0.0.0-20423f5	14 Apr 2026 15:00:12 (UTC)	4	4.0 KB
0.0.0-02a6b4c	13 Apr 2026 15:00:22 (UTC)	3	3.9 KB