Nextflow Modules
Showing module(s) with keyword "featurecounts"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/bam_qc_rnaseq | Workflow | rnaseq bam qc quality_control preseq qualimap dupradar rseqc featurecounts biotype | Run post-alignment QC tools on RNA-seq BAM files including library complexity estimation (Preseq), biotype QC (featureCounts), RNA-seq-specific QC metrics (Qualimap), duplicate rate analysis (dupRadar), and comprehensive RSeQC analysis. |
| nf-core/custom/collectfeaturecounts | Process | featurecounts collect counts tpm | Collects one or more subread/featureCounts raw output files (typically one per sample, for the same feature type/ORF caller) into a single long-format table with per-sample TPM (Transcripts Per Million) computed. |
| nf-core/custom/multiqccustombiotype | Process | biotype featurecounts multiqc rnaseq qc | Generate MultiQC-compatible biotype count summaries from featureCounts output |
| nf-core/rustqc | Process | rnaseq quality control qc bam dupradar featurecounts rseqc preseq qualimap samtools | All-in-one RNA-seq post-alignment QC replacing dupRadar, featureCounts biotype QC, RSeQC, Preseq, Qualimap, and SAMtools stats |