Nextflow Modules
Showing module(s) with keyword "featurecounts"
| Module | Keywords | Description |
|---|---|---|
| nf-core/custom/collectfeaturecounts | featurecounts collect counts tpm | Collects one or more subread/featureCounts raw output files (typically one per sample, for the same feature type/ORF caller) into a single long-format table with per-sample TPM (Transcripts Per Million) computed. |
| nf-core/custom/multiqccustombiotype | biotype featurecounts multiqc rnaseq qc | Generate MultiQC-compatible biotype count summaries from featureCounts output |
| nf-core/rustqc | rnaseq quality control qc bam dupradar featurecounts rseqc preseq qualimap samtools | All-in-one RNA-seq post-alignment QC replacing dupRadar, featureCounts biotype QC, RSeQC, Preseq, Qualimap, and SAMtools stats |