nf-core/deacon/filter @ 0.0.0-0c7146d
Summary
Filter DNA sequences using index of reference genome
Get started
Add the following snippet to your workflow script to include this module.
include { DEACON_FILTER } from 'nf-core/deacon/filter'
License
MIT License
Process
Name
|
DEACON_FILTER |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing reference information. e.g. [ id:'test', single_end:false ] |
|---|---|
index
file
|
Deacon minimizer index file *.idx
|
reads
file
|
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively. *.{fastq,fastq.gz,fqs,fqs.gz,fq,fq.gz}
|
Output
3 channels
#1
log
tuple
meta
map
|
Groovy Map containing reference information. e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}.json
file
|
JSON file containing summary of results. *.json
|
#2
fastq_filtered
tuple
meta
map
|
Groovy Map containing reference information. e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}*.fq.gz
file
|
List of output filtered FastQ files of size 1 and 2, for single-end and paired-end data, respectively. *.fq.gz
|
#3
versions_deacon
tuple
${task.process}
string
|
The name of the process |
|---|---|
deacon
string
|
The name of the tool |
deacon --version | head -n1 | sed "s/deacon //g"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| deacon | Fast alignment-free sequence filter | https://github.com/bede/deacon |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 18:55:45 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fdeacon%2Ffilter/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/deacon/filter/blobs/sha256:63544a25ef936d1764c1245a219ad55f72f59310490c27754b18ff74cd9a1983 |
| Size | 2.9 KB |
| Checksum | sha256:63544a25ef936d1764c1245a219ad55f72f59310490c27754b18ff74cd9a1983 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:12:32 (UTC) | 4 | 2.9 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:08:49 (UTC) | 2 | 2.9 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:55:45 (UTC) | 3 | 2.9 KB |