Nextflow Modules
Showing module(s) with keyword "minimizer"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/deacon/filter | Process | filter index fasta fastq genome reference minimizer decontamination | Filter DNA sequences using index of reference genome |
| nf-core/deacon/index | Process | index fasta genome reference minimizer decontamination | Create deacon index for reference genome |
| nf-core/deacon/indexdiff | Process | index fasta genome reference minimizer decontamination | Subtract minimizers in deacon index (or fasta file) from another index (A - B) |
| nf-core/deacon/indexintersect | Process | index fasta genome reference minimizer decontamination | Intersect multiple deacon indexes (A ∩ B ...) |
| nf-core/deacon/indexunion | Process | index fasta genome reference minimizer decontamination | Combine multiple deacon indexes (A ∪ B ...) |
| nf-core/fastq_decontaminate_deacon_hostile | Workflow | hostile deacon filter index fasta fastq genome reference minimizer decontamination | Decontaminate FastQ files by filtering reads that match a reference genome using Deacon or Hostile |
| nf-core/fastq_index_filter_deacon | Workflow | filter index fasta fastq genome reference minimizer decontamination | Decontaminate FastQ files by filtering reads that match a reference genome using Deacon |