nf-core/dedup @ 0.0.0-3fc6d40
Summary
DeDup is a tool for read deduplication in paired-end read merging (e.g. for ancient DNA experiments).
Get started
Add the following snippet to your workflow script to include this module.
include { DEDUP } from 'nf-core/dedup'
License
MIT License
Name
|
DEDUP |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
BAM/SAM file *.{bam,sam}
|
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}.bam
file
|
Deduplicated BAM file ${prefix}.bam
|
log
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}.log
file
|
Dedup log information ${prefix}.log
|
hist
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}.hist
file
|
Histogram data of amount of deduplication ${prefix}.hist
|
json
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}.json
file
|
JSON file for MultiQC ${prefix}.json
|
versions_dedup
tuple
${task.process}
string
|
The name of the process |
|---|---|
dedup
string
|
The name of the tool |
dedup --version | grep -oE '[0-9]+\.[0-9]+\.[0-9]+'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| dedup | DeDup is a tool for read deduplication in paired-end read merging (e.g. for ancient DNA experiments). | https://github.com/apeltzer/DeDup |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:08:53 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fdedup/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/dedup/blobs/sha256:5c1b1319c87ddff9b36ee1c0aa2efdbed20924d7970988da06a7154e2667b8a3 |
| Size | 2.7 KB |
| Checksum | sha256:5c1b1319c87ddff9b36ee1c0aa2efdbed20924d7970988da06a7154e2667b8a3 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:12:36 (UTC) | 3 | 2.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:08:53 (UTC) | 3 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:55:51 (UTC) | 3 | 2.7 KB |