Nextflow Modules
Showing module(s) with keyword "dedup"
| Module | Keywords | Description |
|---|---|---|
| nf-core/adapterremovalfixprefix | adapterremoval fastq dedup | Fixes prefixes from AdapterRemoval2 output to make sure no clashing read names are in the output. For use with DeDup. |
| nf-core/dedup | dedup deduplication pcr duplicates ancient DNA paired-end bam | DeDup is a tool for read deduplication in paired-end read merging (e.g. for ancient DNA experiments). |
| nf-core/pairtools/dedup | dedup deduplication PCR/optical duplicates pairs | Find and remove PCR/optical duplicates |
| nf-core/sentieon/dedup | mem dedup map bam cram sentieon | Runs the sentieon tool LocusCollector followed by Dedup. LocusCollector collects read information that is used by Dedup which in turn marks or removes duplicate reads. |
| nf-core/umitools/dedup | umitools deduplication dedup | Deduplicate reads based on the mapping co-ordinate and the UMI attached to the read. |
| nf-core/umitools/group | umitools umi deduplication dedup clustering | Group reads based on their UMI and mapping coordinates |
| nf-core/umitools/prepareforrsem | umitools rsem salmon dedup | Make the output from umi_tools dedup or group compatible with RSEM |