Nextflow Modules
Showing module(s) with keyword "deduplication"
| Module | Keywords | Description |
|---|---|---|
| nf-core/dedup | dedup deduplication pcr duplicates ancient DNA paired-end bam | DeDup is a tool for read deduplication in paired-end read merging (e.g. for ancient DNA experiments). |
| nf-core/humid | umi fastq deduplication hamming-distance clustering | HUMID is a tool to quickly and easily remove duplicate reads from FastQ files, with or without UMIs. |
| nf-core/pairtools/dedup | dedup deduplication PCR/optical duplicates pairs | Find and remove PCR/optical duplicates |
| nf-core/umicollapse | umicollapse deduplication genomics | Deduplicate reads based on the mapping co-ordinate and the UMI attached to the read. |
| nf-core/umitools/dedup | umitools deduplication dedup | Deduplicate reads based on the mapping co-ordinate and the UMI attached to the read. |
| nf-core/umitools/group | umitools umi deduplication dedup clustering | Group reads based on their UMI and mapping coordinates |