nf-core/deeptools/multibigwigsummary @ 0.0.0-6c4ed3a
Summary
Computes the average scores for each of the files in every genomic region
Get started
Add the following snippet to your workflow script to include this module.
include { DEEPTOOLS_MULTIBIGWIGSUMMARY } from 'nf-core/deeptools/multibigwigsummary'
License
MIT License
Process
Name
|
DEEPTOOLS_MULTIBIGWIGSUMMARY |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
bigwigs
file
|
Two or more bigWig files *.{bigWig,bw}
|
labels
list
|
Labels for the bigWig files used in the matrix |
#2
tuple
meta2
map
|
Groovy Map containing blacklist metadata e.g. [ id:'blacklist' ] |
|---|---|
blacklist
file
|
BED/GTF file containing regions to exclude from analysis *.{bed,gtf}
|
Output
2 channels
#1
matrix
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.npz
file
|
Matrix file from multiBigwigSummary *.npz
|
#2
versions_deeptools
tuple
${task.process}
string
|
The name of the process |
|---|---|
deeptools
string
|
The name of the tool |
multiBigwigSummary --version | sed "s/multiBigwigSummary //g"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| deeptools | A set of user-friendly tools for normalization and visualization of deep-sequencing data | https://deeptools.readthedocs.io/en/develop/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:13:55 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fdeeptools%2Fmultibigwigsummary/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/deeptools/multibigwigsummary/blobs/sha256:384ae600cc53d9f3412cfee7b46f407bbcc5dd61f359e95354839d0c26129efa |
| Size | 2.5 KB |
| Checksum | sha256:384ae600cc53d9f3412cfee7b46f407bbcc5dd61f359e95354839d0c26129efa |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:13:55 (UTC) | 3 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:10:06 (UTC) | 4 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:57:03 (UTC) | 3 | 2.5 KB |