nf-core/deeptools/plotpca @ 0.0.0-3fc6d40
Summary
Generates principal component analysis (PCA) plot using a compressed matrix generated by multibamsummary or multibigwigsummary as input.
Get started
Add the following snippet to your workflow script to include this module.
include { DEEPTOOLS_PLOTPCA } from 'nf-core/deeptools/plotpca'
License
MIT License
Process
Name
|
DEEPTOOLS_PLOTPCA |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
matrix
file
|
compressed matrix file produced by mutlibamsummary or multibigwigsummary *.{npz}
|
Output
3 channels
#1
pdf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.pdf
file
|
Output figure containing resulting plot *.{plotPCA.pdf}
|
#2
tab
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tab
file
|
Tab file containing data used to generate the PCA plot *.{plotPCA.tab}
|
#3
versions_deeptools
tuple
${task.process}
string
|
The name of the process |
|---|---|
deeptools
string
|
The name of the tool |
plotPCA --version | sed "s/plotPCA //g"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| deeptools | A set of user-friendly tools for normalization and visualization of deep-sequencing data | n/a |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:10:11 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fdeeptools%2Fplotpca/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/deeptools/plotpca/blobs/sha256:f695c272d52dceec95a336296be3a78cd7fa1c9e1f3a741669f883d7e55fcf42 |
| Size | 2.6 KB |
| Checksum | sha256:f695c272d52dceec95a336296be3a78cd7fa1c9e1f3a741669f883d7e55fcf42 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:13:59 (UTC) | 3 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:10:11 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:57:11 (UTC) | 3 | 2.6 KB |