nf-core/diann/insilicolibrarygeneration @ 0.0.0-6c4ed3a
Summary
Generate in silico predicted spectral library using DIA-NN deep learning predictor. This module uses DIA-NN software for data-independent acquisition (DIA) proteomics data processing. Output materials should include attribution: "Generated using DIA-NN".
Get started
Add the following snippet to your workflow script to include this module.
include { DIANN_INSILICOLIBRARYGENERATION } from 'nf-core/diann/insilicolibrarygeneration'
License
MIT License
Process
Name
|
DIANN_INSILICOLIBRARYGENERATION |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fasta
file
|
FASTA sequence database *.{fasta,fa}
|
Output
3 channels
#1
log
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.log
file
|
DIA-NN log file *.log
|
#2
versions_diann
tuple
${task.process}
string
|
The name of the process |
|---|---|
diann
string
|
The name of the tool |
diann | grep "DIA-NN" | grep -oP "\d+\.\d+(\.\w+)*(\.[\d]+)?"
eval
|
The expression to obtain the version of the tool |
#3
predict_speclib
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.predicted.speclib
file
|
In silico predicted spectral library by DIA-NN deep learning predictor *.predicted.speclib
|
| Tool | Description | Homepage |
|---|---|---|
| diann | DIA-NN is a universal software for data-independent acquisition (DIA) proteomics data processing. It uses deep learning to predict spectral libraries and perform peptide identification and quantification. | https://github.com/vdemichev/DiaNN |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:14:13 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fdiann%2Finsilicolibrarygeneration/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/diann/insilicolibrarygeneration/blobs/sha256:6f23e661cc08a7e5db0f1456ab1e4fb6e70666523940733bb611c96072295593 |
| Size | 2.8 KB |
| Checksum | sha256:6f23e661cc08a7e5db0f1456ab1e4fb6e70666523940733bb611c96072295593 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:14:13 (UTC) | 3 | 2.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:57:37 (UTC) | 3 | 2.8 KB |