Nextflow Modules
Showing module(s) with keyword "diann"
| Module | Keywords | Description |
|---|---|---|
| nf-core/diann/insilicolibrarygeneration | diann spectral library proteomics deep learning dia | Generate in silico predicted spectral library using DIA-NN deep learning predictor. This module uses DIA-NN software for data-independent acquisition (DIA) proteomics data processing. Output materials should include attribution: "Generated using DIA-NN". |
| nf-core/quantmsutils/diann2mztab | quantms-utils diann mztab msstats triqler proteomics | Convert DIA-NN results to mzTab, MSstats, and Triqler formats using quantms-utils |
| nf-core/quantmsutils/dianncfg | quantms-utils diann configuration enzyme modifications | Generate DIA-NN configuration arguments from enzyme and Unimod modification parameters. This module uses quantms-utils to convert enzyme and modification specifications into DIA-NN-compatible command-line arguments. Only supports Unimod modifications. For custom modifications, pass arguments directly to the DIANN module. |