Nextflow Registry | nf-core/drep/dereplicate@0.0.0-6c4ed3a

nf-core/drep/dereplicate @ 0.0.0-6c4ed3a

Dereplicates a genome set by identifying highly similar genomes and choose the best representative genome

Latest version: 0.0.0-6c4ed3a

Total downloads: 11

Source: nf-core/modules

Authors: @jfy133

Maintainers: @jfy133

Dereplicates a genome set by identifying highly similar genomes and choose the best representative genome

Add the following snippet to your workflow script to include this module.

include { DREP_DEREPLICATE } from 'nf-core/drep/dereplicate'

MIT License

Process

`Name`	`DREP_DEREPLICATE`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`fastas` file	List of FASTA files to dereplicate `*.{fasta,fa,fna,fas}`

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`drep_work` directory	Optional existing dRep working directory containing pre-computed clustering results (e.g. output from dRep compare)

Output 5 channels

#1 log tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`logger.log` file	logging file containing information about the dereplication process `*.{log}`

#2 fastas tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`dereplicated_genomes/*` file	Representative genomes for each cluster of similar genomes `*.{fasta,fa,fna,fas}`

#3 figures tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`figures/*pdf` file	Figures visualising the dereplication process, such as clustering results and representative genome selection `*.{pdf}`

#4 versions

`versions.yml` file	File containing software versions `versions.yml`

#5 summary_tables tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`data_tables/*.csv` file	Summary tables containing information about the dereplication process including cluster membership of each genome `*.{csv}`

Tool	Description	Homepage
drep	De-replication of microbial genomes assembled from multiple samples	https://drep.readthedocs.io/en/latest/

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:13:41 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fdrep%2Fdereplicate/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/drep/dereplicate/blobs/sha256:d5db51816dad28fdda1f62b3df68d37340e82c54f06cf8cffea3155288bf895e
Size	3.6 KB
Checksum	sha256:d5db51816dad28fdda1f62b3df68d37340e82c54f06cf8cffea3155288bf895e
Downloads	5

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:13:41 (UTC)	5	3.6 KB
0.0.0-3fc6d40	22 Apr 2026 15:09:54 (UTC)	3	3.7 KB
0.0.0-0c7146d	08 Apr 2026 18:56:46 (UTC)