Nextflow Modules
Showing module(s) with keyword "comparison"
| Module | Keywords | Description |
|---|---|---|
| nf-core/deeptools/bamcompare | bam bigwig bedgraph normalization comparison | Compares two BAM files based on the number of mapped reads and generates a bigWig or bedGraph file with the log2 ratio, ratio, difference or other operations. |
| nf-core/drep/compare | drep genome fasta compare comparison visualisation metagenomics assembly microbial genomics dereplication | Performs rapid genome comparisons for a group of genomes and visualize their relatedness |
| nf-core/drep/dereplicate | drep genome fasta compare comparison visualisation metagenomics assembly microbial genomics dereplication | Dereplicates a genome set by identifying highly similar genomes and choose the best representative genome |
| nf-core/gatk4/concordance | concordance gatk4 gatk genomics variant calling genotyping vcf comparison | Evaluate concordance of an input VCF against a validated truth VCF |
| nf-core/samplesheetparser/diff | illumina samplesheet diff comparison bclconvert bcl2fastq genomics | Compare two Illumina SampleSheet.csv files (any combination of V1 and V2) and emit a structured JSON diff covering header changes, added/removed samples, and per-sample field changes. Exits 0 if identical, 1 if differences are detected — useful as a CI pre-run guard. |
| nf-core/truvari/bench | structural variants sv vcf benchmark comparison | Given baseline and comparison sets of variants, calculate the recall/precision/f-measure |
| nf-core/truvari/consistency | structural variants sv vcf intersection comparison | Over multiple vcfs, calculate their intersection/consistency. |