nf-core/emboss/cons @ 0.0.0-3fc6d40
Summary
cons calculates a consensus sequence from a multiple sequence alignment. To obtain the consensus, the sequence weights and a scoring matrix are used to calculate a score for each amino acid residue or nucleotide at each position in the alignment.
Get started
Add the following snippet to your workflow script to include this module.
include { EMBOSS_CONS } from 'nf-core/emboss/cons'
License
MIT License
Process
Name
|
EMBOSS_CONS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
Multiple sequence alignment (unzipped) *.{fasta,fa,fas,fsa,seq,mpfa,aln,clustal,clw,msf,phy,phylip,stockholm,sto,msf,afa,afa,a}
|
Output
2 channels
#1
consensus
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fa
file
|
Consensus sequence calculated from multiple sequence alignment *.fa
|
#2
versions_emboss
tuple
${task.process}
string
|
The name of the process |
|---|---|
emboss
string
|
The name of the tool |
cons -version 2>&1 | sed "s/EMBOSS://"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| emboss | The European Molecular Biology Open Software Suite | https://www.ebi.ac.uk/Tools/sfc/emboss_seqret/ |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:10:48 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Femboss%2Fcons/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/emboss/cons/blobs/sha256:d8caf6cf18333a1f6ca512acde12011893395a080369a9dd20e2f316ec91e1b6 |
| Size | 2.4 KB |
| Checksum | sha256:d8caf6cf18333a1f6ca512acde12011893395a080369a9dd20e2f316ec91e1b6 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:14:48 (UTC) | 4 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:10:48 (UTC) | 3 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:58:28 (UTC) | 4 | 2.4 KB |