nf-core/entrezdirect/esummary @ 0.0.0-6c4ed3a
Summary
Queries an NCBI database using Unique Identifier(s)
Get started
Add the following snippet to your workflow script to include this module.
include { ENTREZDIRECT_ESUMMARY } from 'nf-core/entrezdirect/esummary'
License
MIT License
Process
Name
|
ENTREZDIRECT_ESUMMARY |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
uid
string
|
Unique Identifier (UID) of record in NCBI database. Cannot be used at the same time as uids_file |
uids_file
file
|
Text file containing multiple UIDs. Cannot be used at the same time as uid. |
database
string
|
Value must be a valid Entrez database name ('assembly', etc). |
|---|
Output
2 channels
#1
xml
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.xml
file
|
Query result in XML format *.xml
|
#2
versions_esummary
tuple
${task.process}
string
|
The name of the process |
|---|---|
ENTREZDIRECT
string
|
The name of the tool |
esummary -version 2>&1
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| entrezdirect | Entrez Direct (EDirect) is a method for accessing the NCBI's set of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command line arguments. Individual operations are combined to build multi-step queries. Record retrieval and formatting normally complete the process. | https://www.ncbi.nlm.nih.gov/books/NBK179288/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:15:01 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fentrezdirect%2Fesummary/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/entrezdirect/esummary/blobs/sha256:0293b305a35bd7fc57ae740344be33beb6278b8b3a51a7eb96149b4f495699d9 |
| Size | 2.8 KB |
| Checksum | sha256:0293b305a35bd7fc57ae740344be33beb6278b8b3a51a7eb96149b4f495699d9 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:15:01 (UTC) | 3 | 2.8 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:10:56 (UTC) | 3 | 2.9 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:58:47 (UTC) | 3 | 2.8 KB |