nf-core/fcsgx/fetchdb @ 0.0.0-6c4ed3a
Summary
Fetches the NCBI FCS-GX database using a provided manifest URL
Get started
Add the following snippet to your workflow script to include this module.
include { FCSGX_FETCHDB } from 'nf-core/fcsgx/fetchdb'
License
MIT License
Process
Name
|
FCSGX_FETCHDB |
|---|
Input
1 channel
manifest
file
|
URL to a FCXGX database https://ftp*.manifest
|
|---|
Output
2 channels
#1
database
$prefix
directory
|
A directory containing an FCSGX database |
|---|
#2
versions_fcsgx
tuple
${task.process}
string
|
The name of the process |
|---|---|
fcsgx
string
|
The name of the tool |
gx --help | sed '/build/!d; s/.*:v//; s/-.*//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| fcsgx | The NCBI Foreign Contamination Screen. Genomic cross-species aligner, for contamination detection. | https://github.com/ncbi/fcs-gx |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:17:06 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Ffcsgx%2Ffetchdb/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/fcsgx/fetchdb/blobs/sha256:46620bee7f474c2565353e02091c90183dca544da200340775e6dd311c324ca8 |
| Size | 2.3 KB |
| Checksum | sha256:46620bee7f474c2565353e02091c90183dca544da200340775e6dd311c324ca8 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:17:06 (UTC) | 3 | 2.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:12:06 (UTC) | 2 | 2.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:00:46 (UTC) | 2 | 2.3 KB |